HBV Target gene Detail Information

> SLMAP Gene Search Result


Gene Information
Gene Name SLMAP
Gene ID 7871
Gene Full Name sarcolemma associated protein
Gene Alias SLAP
Transcripts ENSG00000163681
Virus HBV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q14BN4
HGNC ID HGNC:16643
OMIM ID 602701
Summary This gene encodes a component of a conserved striatin-interacting phosphatase and kinase complex. Striatin family complexes participate in a variety of cellular processes including signaling, cell cycle control, cell migration, Golgi assembly, and apoptosis. The protein encoded by this gene is a coiled-coil, tail-anchored membrane protein with a single C-terminal transmembrane domain that is posttranslationally inserted into membranes. Mutations in this gene are associated with Brugada syndrome, a cardiac channelopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015]
Target gene [SLMAP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002182 chr3 126 68 127 321 View
1003399 chr3 22 16 98 136 View
1010937 chr3 3 6 1 10 View
1011942 chr3 4 4 0 8 View
1012109 chr3 1 5 1 7 View
1020948 chr3 3 6 1 10 View
1020949 chr3 1 5 1 7 View

Target gene [SLMAP] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SLMAP peak across samples

Peak Plot

> Dataset: GSE68402 - SLMAP peak across samples

Peak Plot

> Dataset: GSE270130 - SLMAP peak across samples

Peak Plot

> Dataset: GSE100400 - SLMAP peak across samples

Peak Plot

> Dataset: GSE131257 - SLMAP peak across samples

Peak Plot