HTLV1 Target gene Detail Information

> SMCO4 Gene Search Result


Gene Information
Gene Name SMCO4
Gene ID 56935
Gene Full Name single-pass membrane protein with coiled-coil domains 4
Gene Alias C11orf75|FN5
Transcripts ENSG00000166002
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q9NRQ5
HGNC ID HGNC:24810
OMIM ID 609477
Summary Predicted to be located in membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SMCO4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6003380 chr11 159 3 1 163 View
6004438 chr11 83 20 12 115 View
6004999 chr11 91 3 5 99 View
6014060 chr11 17 0 0 17 View
6020020 chr11 1 3 3 7 View
6023969 chr11 1 3 0 4 View

Target gene [SMCO4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SMCO4 peak across samples

Peak Plot