HTLV1 Target gene Detail Information

> SMOC1 Gene Search Result


Gene Information
Gene Name SMOC1
Gene ID 64093
Gene Full Name SPARC related modular calcium binding 1
Gene Alias OAS
Transcripts ENSG00000198732
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Secreted to extracellular matrix;
Membrane Info Disease related genes, Human disease related genes, Predicted secreted proteins
Uniport_ID Q9H4F8
HGNC ID HGNC:20318
OMIM ID 608488
Summary This gene encodes a multi-domain secreted protein that may have a critical role in ocular and limb development. Mutations in this gene are associated with microphthalmia and limb anomalies. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2011]
Target gene [SMOC1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000778 chr14 5 717 143 865 View
6004733 chr14 55 13 38 106 View

Target gene [SMOC1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SMOC1 peak across samples

Peak Plot