HTLV1 Target gene Detail Information

> SMPD2 Gene Search Result


Gene Information
Gene Name SMPD2
Gene ID 6610
Gene Full Name sphingomyelin phosphodiesterase 2
Gene Alias ISC1|NSMASE|NSMASE1
Transcripts ENSG00000135587
Virus HTLV1
Gene Type protein-coding
HPA Location Info Vesicles, Plasma membrane;Cell Junctions;
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID O60906
HGNC ID HGNC:11121
OMIM ID 603498
Summary This gene encodes a protein which was initially identified as a sphingomyelinase based on sequence similarity between bacterial sphingomyelinases and a yeast protein. Subsequent studies showed that its biological function is less likely to be as a sphingomyelinase and instead as a lysophospholipase. [provided by RefSeq, Oct 2009]
Target gene [SMPD2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004742 chr6 103 2 0 105 View

Target gene [SMPD2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SMPD2 peak across samples

Peak Plot