HTLV1 Target gene Detail Information

> SMYD2 Gene Search Result


Gene Information
Gene Name SMYD2
Gene ID 56950
Gene Full Name SET and MYND domain containing 2
Gene Alias HSKM-B|KMT3C|ZMYND14
Transcripts ENSG00000143499
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Mitochondria;
Membrane Info Enzymes, Predicted intracellular proteins
Uniport_ID Q9NRG4
HGNC ID HGNC:20982
OMIM ID 610663
Summary SET domain-containing proteins, such as SMYD2, catalyze lysine methylation (Brown et al., 2006 [PubMed 16805913]).[supplied by OMIM, Nov 2008]
Target gene [SMYD2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6020606 chr1 6 0 0 6 View
6020639 chr1 6 0 0 6 View

Target gene [SMYD2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SMYD2 peak across samples

Peak Plot