Gene Name	SNCAIP
Gene ID	9627
Gene Full Name	synuclein alpha interacting protein
Gene Alias	SYPH1|Sph1
Transcripts	ENSG00000064692
Virus	HBV
Gene Type	protein-coding
HPA Location Info	Cytoplasmic bodies;Nucleoplasm;
Membrane Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q9Y6H5
HGNC ID	HGNC:11139
OMIM ID	603779
Summary	This gene encodes a protein containing several protein-protein interaction domains, including ankyrin-like repeats, a coiled-coil domain, and an ATP/GTP-binding motif. The encoded protein interacts with alpha-synuclein in neuronal tissue and may play a role in the formation of cytoplasmic inclusions and neurodegeneration. A mutation in this gene has been associated with Parkinson's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1004226	chr5	73	11	4	88	View
1007376	chr5	10	15	3	28	View
1015669	chr5	1	1	0	2	View
1041461	chr5	0	1	0	1	View
1041462	chr5	61	60	27	148	View

Data ID	Experiment type	Sample number	Platform
GSE236281	RNA-seq	12	Illumina MiSeq (Homo sapiens)
C   GSE35465	Chip-seq;RNA-seq	6	Illumina HiSeq 2000 (Homo sapiens)
C   GSE68402	Chip-seq	26	Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV	DNA methylation sequencing;RNA-seq	97	TCGA
C   GSE270130	Chip-seq	27	Illumina NovaSeq 6000 (Homo sapiens)
C   GSE64877	Chip-seq	2	Illumina Genome Analyzer (Homo sapiens)
GSE224901	RNA-seq	21	Illumina NovaSeq 6000 (Homo sapiens)
GSE100400	Chip-seq;RNA-seq;4C_cccDNA	31	Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897	RNA-seq	95	Illumina HiSeq 4000 (Homo sapiens)
GSE262515	RNA-seq	21	Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345	RNA-seq	4	Illumina HiSeq 2500 (Homo sapiens)
C   GSE131257	ATAC-seq;RNA-seq	19	Illumina HiSeq 2500 (Homo sapiens)
GSE94660	RNA-seq	42	Illumina HiSeq 2500 (Homo sapiens)

• Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE35465 - SNCAIP peak across samples

Peak Plot

> Dataset: GSE68402 - SNCAIP peak across samples

Peak Plot

> Dataset: GSE270130 - SNCAIP peak across samples

Peak Plot

> Dataset: GSE64877 - SNCAIP peak across samples

Peak Plot

> Dataset: GSE131257 - SNCAIP peak across samples

Peak Plot