HTLV1 Target gene Detail Information

> SOX5 Gene Search Result


Gene Information
Gene Name SOX5
Gene ID 6660
Gene Full Name SRY-box transcription factor 5
Gene Alias L-SOX5|L-SOX5B|L-SOX5F|LAMSHF
Transcripts ENSG00000134532
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID P35711
HGNC ID HGNC:11201
OMIM ID 604975
Summary This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The encoded protein may play a role in chondrogenesis. A pseudogene of this gene is located on chromosome 8. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Target gene [SOX5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002775 chr12 203 7 0 210 View
6005389 chr12 66 18 4 88 View
6009610 chr12 25 11 0 36 View
6011710 chr12 25 0 0 25 View
6019754 chr12 4 1 2 7 View
6024210 chr12 1 2 0 3 View
6030178 chr12 0 1 0 1 View
6031437 chr12 0 0 0 0 View
6032319 chr12 0 0 0 0 View
6032566 chr12 0 0 0 0 View

Target gene [SOX5] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SOX5 peak across samples

Peak Plot