HTLV1 Target gene Detail Information

> SPOCK3 Gene Search Result


Gene Information
Gene Name SPOCK3
Gene ID 50859
Gene Full Name SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
Gene Alias HSAJ1454|TES-3|TICN3
Transcripts ENSG00000196104
Virus HTLV1
Gene Type protein-coding
HPA Location Info Secreted to extracellular matrix;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q9BQ16
HGNC ID HGNC:13565
OMIM ID 607989
Summary This gene encodes a member of a novel family of calcium-binding proteoglycan proteins that contain thyroglobulin type-1 and Kazal-like domains. The encoded protein and may play a role in adult T-cell leukemia by inhibiting the activity of membrane-type matrix metalloproteinases. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2011]
Target gene [SPOCK3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6007751 chr4 39 12 1 52 View
6014846 chr4 1 14 0 15 View
6030727 chr4 0 0 0 0 View

Target gene [SPOCK3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SPOCK3 peak across samples

Peak Plot