HTLV1 Target gene Detail Information

> SRGAP1 Gene Search Result


Gene Information
Gene Name SRGAP1
Gene ID 57522
Gene Full Name SLIT-ROBO Rho GTPase activating protein 1
Gene Alias ARHGAP13|NMTC2
Transcripts ENSG00000196935
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Centrosome, Basal body;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q7Z6B7
HGNC ID HGNC:17382
OMIM ID 606523
Summary The protein encoded by this gene is a GTPase activator, working with the GTPase CDC42 to negatively regulate neuronal migration. The encoded protein interacts with the transmembrane receptor ROBO1 to inactivate CDC42. [provided by RefSeq, Sep 2016]
Target gene [SRGAP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002941 chr12 33 27 137 197 View
6005566 chr12 1 42 41 84 View
6011028 chr12 28 0 0 28 View
6011560 chr12 26 0 0 26 View
6011561 chr12 26 0 0 26 View
6012242 chr12 0 23 0 23 View

Target gene [SRGAP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SRGAP1 peak across samples

Peak Plot