HTLV1 Target gene Detail Information

> SRSF5 Gene Search Result


Gene Information
Gene Name SRSF5
Gene ID 6430
Gene Full Name serine and arginine rich splicing factor 5
Gene Alias HRS|SFRS5|SRP40
Transcripts ENSG00000100650
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q13243
HGNC ID HGNC:10787
OMIM ID 600914
Summary The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]
Target gene [SRSF5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000828 chr14 810 3 0 813 View
6002141 chr14 264 15 0 279 View

Target gene [SRSF5] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SRSF5 peak across samples

Peak Plot