HTLV1 Target gene Detail Information

> SYNE3 Gene Search Result


Gene Information
Gene Name SYNE3
Gene ID 161176
Gene Full Name spectrin repeat containing nuclear envelope family member 3
Gene Alias C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3
Transcripts ENSG00000176438
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear membrane;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q6ZMZ3
HGNC ID HGNC:19861
OMIM ID 610861
Summary Enables actin filament binding activity and cytoskeleton-nuclear membrane anchor activity. Involved in cytoskeleton organization; establishment of protein localization to membrane; and regulation of cell shape. Located in nuclear membrane. Part of meiotic nuclear membrane microtubule tethering complex. Biomarker of Huntington's disease. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SYNE3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6001656 chr14 321 33 21 375 View
6003740 chr14 24 65 54 143 View

Target gene [SYNE3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SYNE3 peak across samples

Peak Plot