HTLV1 Target gene Detail Information

> TCF20 Gene Search Result


Gene Information
Gene Name TCF20
Gene ID 6942
Gene Full Name transcription factor 20
Gene Alias AR1|DDVIBA|SPBP|TCF-20
Transcripts ENSG00000100207
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nuclear bodies;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9UGU0
HGNC ID HGNC:11631
OMIM ID 603107
Summary This gene encodes a transcription factor that recognizes the platelet-derived growth factor-responsive element in the matrix metalloproteinase 3 promoter. The encoded protein is thought to be a transcriptional coactivator, enhancing the activity of transcription factors such as JUN and SP1. Mutations in this gene are associated with autism spectrum disorders. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
Target gene [TCF20] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006126 chr22 70 4 0 74 View
6015252 chr22 14 0 0 14 View
6018136 chr22 6 3 0 9 View
6018138 chr22 6 3 0 9 View
6018145 chr22 6 3 0 9 View
6018152 chr22 6 3 0 9 View
6018155 chr22 6 3 0 9 View
6022366 chr22 4 1 0 5 View

Target gene [TCF20] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TCF20 peak across samples

Peak Plot