HTLV1 Target gene Detail Information

> TMCO3 Gene Search Result


Gene Information
Gene Name TMCO3
Gene ID 55002
Gene Full Name transmembrane and coiled-coil domains 3
Gene Alias C13orf11|SLC9D1
Transcripts ENSG00000150403
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q6UWJ1
HGNC ID HGNC:20329
OMIM ID 617134
Summary This gene encodes a member of the monovalent cation:proton antiporter 2 (CPA2) family of transporter proteins. Members of this family typically couple the export of monovalent cations, such as potassium or sodium, to the import of protons across cellular membranes. Mutations in this gene have been identified in patients with a rare inherited vision defect, cornea guttata with anterior polar cataract. [provided by RefSeq, Mar 2017]
Target gene [TMCO3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002736 chr13 170 40 2 212 View
6007465 chr13 46 4 4 54 View
6013978 chr13 17 0 0 17 View

Target gene [TMCO3] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TMCO3 peak across samples

Peak Plot