HTLV1 Target gene Detail Information

> TMTC2 Gene Search Result


Gene Information
Gene Name TMTC2
Gene ID 160335
Gene Full Name transmembrane O-mannosyltransferase targeting cadherins 2
Gene Alias IBDBP1
Transcripts ENSG00000179104
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Actin filaments;
Membrane Info Enzymes, Predicted membrane proteins
Uniport_ID Q8N394
HGNC ID HGNC:25440
OMIM ID 615856
Summary The protein encoded by this gene is an integral membrane protein localized to the endoplasmic reticulum (ER). The encoded protein contains many tetratricopeptide repeats, sequences known for being involved in protein-protein interactions. This protein binds both the calcium uptake pump SERCA2B and the carbohydrate-binding chaperone calnexin, and it appears to play a role in calcium homeostasis in the ER. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016]
Target gene [TMTC2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002529 chr12 103 128 2 233 View
6020251 chr12 3 2 2 7 View
6020356 chr12 0 7 0 7 View
6029600 chr12 0 0 1 1 View

Target gene [TMTC2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TMTC2 peak across samples

Peak Plot