HBV Target gene Detail Information

> TPCN2 Gene Search Result


Gene Information
Gene Name TPCN2
Gene ID 219931
Gene Full Name two pore segment channel 2
Gene Alias SHEP10|TPC2
Transcripts ENSG00000162341
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoli;
Membrane Info Predicted membrane proteins, Transporters, Voltage-gated ion channels
Uniport_ID Q8NHX9
HGNC ID HGNC:20820
OMIM ID 612163
Summary This gene encodes a putative cation-selective ion channel with two repeats of a six-transmembrane-domain. The protein localizes to lysosomal membranes and enables nicotinic acid adenine dinucleotide phosphate (NAADP) -induced calcium ion release from lysosome-related stores. This ubiquitously expressed gene has elevated expression in liver and kidney. Two common nonsynonymous SNPs in this gene strongly associate with blond versus brown hair pigmentation.[provided by RefSeq, Dec 2009]
Target gene [TPCN2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001241 chr11 614 154 96 864 View
1006861 chr11 1 6 26 33 View
1008908 chr11 17 1 0 18 View
1021223 chr11 17 1 0 18 View
1021224 chr11 614 154 96 864 View
1041894 chr11 905 191 127 1223 View

Target gene [TPCN2] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - TPCN2 peak across samples

Peak Plot

> Dataset: GSE68402 - TPCN2 peak across samples

Peak Plot

> Dataset: GSE270130 - TPCN2 peak across samples

Peak Plot

> Dataset: GSE100400 - TPCN2 peak across samples

Peak Plot

> Dataset: GSE131257 - TPCN2 peak across samples

Peak Plot