HPV Target gene Detail Information

> TRIM6-TRIM34 Gene Search Result


Gene Information
Gene Name TRIM6-TRIM34
Gene ID 445372
Gene Full Name TRIM6-TRIM34 readthrough
Gene Alias IFP1|RNF21|RNF89|TRIM34|TRIM6
Transcripts ENSG00000258588
Virus HPV
Gene Type protein-coding
HPA Location Info Centrosome;Nucleoli;
Membrane Info Predicted intracellular proteins
HGNC ID HGNC:33440
Summary The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This gene represents a readthrough transcript from genes TRIM6 and TRIM34, and it was described as a splice variant of TRIM34. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. [provided by RefSeq, Nov 2009]
Target gene [TRIM6-TRIM34] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5009194 chr11 12 3 11 26 View
5010993 chr11 3 7 21 31 View

Target gene [TRIM6-TRIM34] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE143026 ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip