HTLV1 Target gene Detail Information

> VPS13B Gene Search Result


Gene Information
Gene Name VPS13B
Gene ID 157680
Gene Full Name vacuolar protein sorting 13 homolog B
Gene Alias BLTP5B|CHS1|COH1
Transcripts ENSG00000132549
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cell Junctions;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q7Z7G8
HGNC ID HGNC:2183
OMIM ID 607817
Summary This gene encodes a potential transmembrane protein that may function in vesicle-mediated transport and sorting of proteins within the cell. This protein may play a role in the development and the function of the eye, hematological system, and central nervous system. Mutations in this gene have been associated with Cohen syndrome. Multiple splice variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Target gene [VPS13B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002796 chr8 208 1 0 209 View
6007606 chr8 40 12 1 53 View
6010420 chr8 30 1 0 31 View
6020339 chr8 0 4 3 7 View
6021581 chr8 2 4 0 6 View
6023544 chr8 2 0 2 4 View
6024746 chr8 1 2 0 3 View
6028309 chr8 0 1 0 1 View
6028746 chr8 0 1 0 1 View
6029578 chr8 1 0 0 1 View
6029579 chr8 1 0 0 1 View
6032761 chr8 0 0 0 0 View
6032946 chr8 0 0 0 0 View

Target gene [VPS13B] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - VPS13B peak across samples

Peak Plot