HTLV1 Target gene Detail Information

> VPS50 Gene Search Result


Gene Information
Gene Name VPS50
Gene ID 55610
Gene Full Name VPS50 subunit of EARP/GARPII complex
Gene Alias CCDC132|NEDMSC|VPS54L
Transcripts ENSG00000004766
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane, Cytosol;Primary cilium, Basal body, Mid piece, Principal piece, End piece;
Membrane Info Disease related genes, Predicted intracellular proteins
Uniport_ID Q96JG6
HGNC ID HGNC:25956
OMIM ID 616465
Summary Enables SNARE binding activity. Acts upstream of or within endocytic recycling. Located in recycling endosome. Part of EARP complex. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [VPS50] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6019212 chr7 7 1 0 8 View
6028136 chr7 0 1 0 1 View

Target gene [VPS50] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - VPS50 peak across samples

Peak Plot