HTLV1 Target gene Detail Information

> VTI1A Gene Search Result


Gene Information
Gene Name VTI1A
Gene ID 143187
Gene Full Name vesicle transport through interaction with t-SNAREs 1A
Gene Alias MMDS3|MVti1|VTI1RP2|Vti1-rp2
Transcripts ENSG00000151532
Virus HTLV1
Gene Type protein-coding
HPA Location Info Golgi apparatus, Vesicles;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96AJ9
HGNC ID HGNC:17792
OMIM ID 614316
Summary The protein encoded by this gene is a member of the family of soluble N-ethylmaleimide-sensitive fusion protein-attachment protein receptors (SNAREs) that function in intracellular trafficking. This family member is involved in vesicular transport between endosomes and the trans-Golgi network. It is a vesicle-associated SNARE (v-SNARE) that interacts with target membrane SNAREs (t-SNAREs). Polymorphisms in this gene have been associated with binocular function, and also with susceptibility to colorectal and lung cancers. A recurrent rearrangement has been found between this gene and the transcription factor 7-like 2 (TCF7L2) gene in colorectal cancers. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
Target gene [VTI1A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004405 chr10 76 40 1 117 View
6013997 chr10 17 0 0 17 View
6022422 chr10 3 2 0 5 View
6025796 chr10 3 0 0 3 View

Target gene [VTI1A] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - VTI1A peak across samples

Peak Plot