HTLV1 Target gene Detail Information

> VWA3B Gene Search Result


Gene Information
Gene Name VWA3B
Gene ID 200403
Gene Full Name von Willebrand factor A domain containing 3B
Gene Alias SCAR22
Transcripts ENSG00000168658
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cytosol;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q502W6
HGNC ID HGNC:28385
OMIM ID 614884
Summary This gene encodes an intracellular protein that contains a von Willebrand factor type A domain. Intracellular proteins with VWA domains are thought to function in transcription, DNA repair, ribosomal and membrane transport and the proteasome. Mutations in this gene are associated with Spinocerebellar ataxia, autosomal recessive 22. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, May 2017]
Target gene [VWA3B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002421 chr2 234 5 5 244 View
6007599 chr2 47 0 6 53 View
6007601 chr2 47 0 6 53 View
6007602 chr2 47 0 6 53 View
6010066 chr2 33 0 0 33 View
6011574 chr2 25 1 0 26 View
6011575 chr2 25 1 0 26 View
6016220 chr2 8 4 0 12 View

Target gene [VWA3B] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - VWA3B peak across samples

Peak Plot