Gene Information
|
Gene Name
|
WDR49 |
|
Gene ID
|
151790
|
|
Gene Full Name
|
WD repeat domain 49 |
|
Gene Alias
|
CFAP337 |
|
Transcripts
|
ENSG00000174776
|
|
Virus
|
HBV |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Nucleoplasm, Nuclear bodies;Primary cilium tip, Primary cilium transition zone, Basal body, Cytosol; 
|
|
Membrane Info
|
Predicted intracellular proteins |
|
Uniport_ID
|
Q8IV35
|
|
HGNC ID
|
HGNC:26587
|
|
Summary
|
This gene encodes a member of the WD repeat protein family with nine WD repeats. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2017] |
Target gene [WDR49] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 1005480 |
chr3 |
16 |
31 |
6 |
53 |
View |
| 1010715 |
chr3 |
11 |
0 |
0 |
11 |
View |
| 1010716 |
chr3 |
11 |
0 |
0 |
11 |
View |
| 1012154 |
chr3 |
6 |
1 |
0 |
7 |
View |
| 1022575 |
chr3 |
16 |
31 |
6 |
53 |
View |
| 1024022 |
chr3 |
1 |
3 |
0 |
4 |
View |
| 1042801 |
chr3 |
4 |
11 |
9 |
24 |
View |
Target gene [WDR49] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
GSE236281
|
RNA-seq |
12 |
Illumina MiSeq (Homo sapiens) |
|
C GSE68402
|
Chip-seq |
26 |
Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens) |
|
GSE247322
|
scRNA-seq |
27 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
TCGA_LIHC_HBV
|
DNA methylation sequencing;RNA-seq |
97 |
TCGA |
|
C GSE270130
|
Chip-seq |
27 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
GSE224901
|
RNA-seq |
21 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
GSE100400
|
Chip-seq;RNA-seq;4C_cccDNA |
31 |
Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus) |
|
GSE173897
|
RNA-seq |
95 |
Illumina HiSeq 4000 (Homo sapiens) |
|
GSE262515
|
RNA-seq |
21 |
Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus) |
|
GSE110345
|
RNA-seq |
4 |
Illumina HiSeq 2500 (Homo sapiens) |
|
C GSE131257
|
ATAC-seq;RNA-seq |
19 |
Illumina HiSeq 2500 (Homo sapiens) |
|
GSE94660
|
RNA-seq |
42 |
Illumina HiSeq 2500 (Homo sapiens) |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE68402 - WDR49 peak across samples
|
Peak Plot
|
> Dataset: GSE270130 - WDR49 peak across samples
|
Peak Plot
|
> Dataset: GSE131257 - WDR49 peak across samples
|
Peak Plot
|
|
|
HBV Target gene Detail Information
