HBV Target gene Detail Information

> APOA2 Gene Search Result


Gene Information
Gene Name APOA2
Gene ID 336
Gene Full Name apolipoprotein A2
Gene Alias Apo-AII|ApoA-II|apoAII
Transcripts ENSG00000158874
Virus HBV
Gene Type protein-coding
HPA Location Info Secreted to blood;
Membrane Info Cancer-related genes, Candidate cardiovascular disease genes, Human disease related genes, Metabolic proteins, Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins, Transporters
Uniport_ID P02652
HGNC ID HGNC:601
OMIM ID 107670
Summary This gene encodes apolipoprotein (apo-) A-II, which is the second most abundant protein of the high density lipoprotein particles. The protein is found in plasma as a monomer, homodimer, or heterodimer with apolipoprotein D. Defects in this gene may result in apolipoprotein A-II deficiency or hypercholesterolemia. [provided by RefSeq, Jul 2008]
Target gene [APOA2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1003875 chr1 15 87 1 103 View
1003876 chr1 14 88 1 103 View
1006786 chr1 23 11 0 34 View
1006952 chr1 23 9 0 32 View
1007366 chr1 23 5 0 28 View
1007731 chr1 25 0 0 25 View
1007853 chr1 19 5 0 24 View
1008850 chr1 19 0 0 19 View
1038963 chr1 42 6 0 48 View
1038964 chr1 44 7 0 51 View
1038965 chr1 44 7 0 51 View
1038966 chr1 44 7 0 51 View
1038967 chr1 44 7 0 51 View
1038968 chr1 43 7 0 50 View
1038969 chr1 43 7 0 50 View
1038970 chr1 44 7 0 51 View

Target gene [APOA2] related to Omics data
Data ID Experiment type Sample number Platform
S
  GSE252863 		scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
S
  GSE247322 		scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - APOA2 expression across samples

Volcano Plot

Bar Plot