HTLV1 Target gene Detail Information

> CNTN1 Gene Search Result


Gene Information
Gene Name CNTN1
Gene ID 1272
Gene Full Name contactin 1
Gene Alias CMYO12|CMYP12|F3|GP135|MYPCN
Transcripts ENSG00000018236
Virus HTLV1
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q12860
HGNC ID HGNC:2171
OMIM ID 600016
Summary The protein encoded by this gene is a member of the immunoglobulin superfamily. It is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
Target gene [CNTN1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6018787 chr12 7 1 1 9 View
6025206 chr12 3 0 0 3 View
6027029 chr12 2 0 0 2 View
6028515 chr12 1 0 0 1 View
6028961 chr12 0 1 0 1 View
6030952 chr12 0 0 0 0 View

Target gene [CNTN1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CNTN1 peak across samples

Peak Plot