HPV Target gene Detail Information

> FAM228B Gene Search Result


Gene Information
Gene Name FAM228B
Gene ID 375190
Gene Full Name family with sequence similarity 228 member B
Gene Alias -
Transcripts ENSG00000219626
Virus HPV
Gene Type protein-coding
HPA Location Info Golgi apparatus;
Membrane Info Predicted intracellular proteins
Uniport_ID P0C875
HGNC ID HGNC:24736
Target gene [FAM228B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5013177 chr2 4 1 0 5 View
5013178 chr2 3 1 0 4 View
5013179 chr2 3 1 0 4 View
5015419 chr2 43 22 21 86 View

Target gene [FAM228B] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - FAM228B peak across samples

Peak Plot

> Dataset: GSE143026 - FAM228B peak across samples

Peak Plot