HPV Target gene Detail Information

> IQCJ-SCHIP1 Gene Search Result


Gene Information
Gene Name IQCJ-SCHIP1
Gene ID 100505385
Gene Full Name IQCJ-SCHIP1 readthrough
Gene Alias -
Transcripts ENSG00000283154
Virus HPV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID B3KU38
HGNC ID HGNC:38842
Summary This locus represents naturally occurring read-through transcription from the neighboring IQ motif containing J (IQCJ) and schwannomin interacting protein 1 (SCHIP1) genes. Alternative splicing results in multiple transcript variants that are composed of in-frame exons from each individual gene. The resulting fusion products are thought to be components of the multimolecular complexes of axon initial segments and nodes of Ranvier, and they may play a role in calcium-mediated responses. [provided by RefSeq, Oct 2010]
Target gene [IQCJ-SCHIP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5008418 chr3 0 3 0 3 View
5009919 chr3 9 5 1 15 View
5015862 chr3 24 19 0 43 View
5015863 chr3 215 259 144 618 View
5015864 chr3 20 12 2 34 View

Target gene [IQCJ-SCHIP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - IQCJ-SCHIP1 peak across samples

Peak Plot

> Dataset: GSE143026 - IQCJ-SCHIP1 peak across samples

Peak Plot