Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE40774
Status 2015/3/4
Title Integrative genomic analysis identifies clinically relevant subtypes of head and neck cancer characterized by hypoxia, T-cell infiltration, and EMT
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Current classification of head and neck squamous cell carcinomas (HNSCC) based on anatomic site and clinical stage fails to capture biologic heterogeneity or adequately inform treatment. Here we use consensus clustering on 371 HNSCC in three cohorts, including a new cohort of 134 patients with locoregionally advanced HNSCC and 43% HPV(+) tumors to identify five HNSCC subtypes. Subtypes closely correlate with biologic processes (hypoxia, cytotoxic T-cell infiltration, copy number changes, EGFR/HER-ligand phenotype), survival, and HPV-status. Two biologically distinct HPV-associated subtypes are identified. Gene modules of candidate drivers characterize each subtype using the CONEXIC algorithm. The proposed 5-subtype classification provides a biologic basis for future clinical and preclinical studies and lays the groundwork for improved prognostication and therapy development in HNSCC.
Samples
GSM ID Sample info Characteristics Description
GSM1001168 Head and neck Squamous cell carcinomas_OROPHARYNX_1 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7027977
GSM1001169 Head and neck Squamous cell carcinomas_OROPHARYNX_2 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7029262
GSM1001170 Head and neck Squamous cell carcinomas_OROPHARYNX_3 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8018109
GSM1001171 Head and neck Squamous cell carcinomas_ORAL CAVITY_4 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 7027678
GSM1001172 Head and neck Squamous cell carcinomas_OROPHARYNX_5 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:neg 8016199
GSM1001173 Head and neck Squamous cell carcinomas_OROPHARYNX_6 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7045170
GSM1001174 Head and neck Squamous cell carcinomas_ORAL CAVITY_7 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 7027885
GSM1001175 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_8 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 60101
GSM1001176 Head and neck Squamous cell carcinomas_ORAL CAVITY_9 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 7045406
GSM1001177 Head and neck Squamous cell carcinomas_HYPOPHARYNX_10 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 9097964
GSM1001178 Head and neck Squamous cell carcinomas_GLOTTIC LARYNX_11 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:GLOTTIC LARYNX; gender:M; hpv status:neg 60634
GSM1001179 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_12 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 42362
GSM1001180 Head and neck Squamous cell carcinomas_ORAL CAVITY_13 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 46897
GSM1001181 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_14 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 69710
GSM1001182 Head and neck Squamous cell carcinomas_HYPOPHARYNX_15 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 45391
GSM1001183 Head and neck Squamous cell carcinomas_ORAL CAVITY_16 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 42764
GSM1001184 Head and neck Squamous cell carcinomas_ORAL CAVITY_17 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 7027992
GSM1001185 Head and neck Squamous cell carcinomas_OROPHARYNX_18 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7027991
GSM1001186 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_19 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 9057518
GSM1001188 Head and neck Squamous cell carcinomas_ORAL CAVITY_21 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 42677
GSM1001187 Head and neck Squamous cell carcinomas_ORAL CAVITY_20 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 9097967
GSM1001199 Head and neck Squamous cell carcinomas_OROPHARYNX_32 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 63075
GSM1001189 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_22 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 69696
GSM1001227 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_60 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 7046454
GSM1001262 Head and neck Squamous cell carcinomas_ORAL CAVITY_95 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 42544
GSM1001200 Head and neck Squamous cell carcinomas_ORAL CAVITY_33 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 7016677
GSM1001228 Head and neck Squamous cell carcinomas_ORAL CAVITY_61 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:pos 6004520
GSM1001263 Head and neck Squamous cell carcinomas_OROPHARYNX_96 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42587
GSM1001190 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_23 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 42813
GSM1001201 Head and neck Squamous cell carcinomas_ORAL CAVITY_34 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 8014923
GSM1001229 Head and neck Squamous cell carcinomas_OROPHARYNX_62 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7046601
GSM1001191 Head and neck Squamous cell carcinomas_OROPHARYNX_24 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 8017273
GSM1001264 Head and neck Squamous cell carcinomas_OROPHARYNX_97 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:pos 46266
GSM1001230 Head and neck Squamous cell carcinomas_ORAL CAVITY_63 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 8017641
GSM1001265 Head and neck Squamous cell carcinomas_OROPHARYNX_98 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42860
GSM1001192 Head and neck Squamous cell carcinomas_OROPHARYNX_25 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7044816
GSM1001231 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_64 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 7046265
GSM1001266 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_99 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 42621
GSM1001202 Head and neck Squamous cell carcinomas_OROPHARYNX_35 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7029177
GSM1001232 Head and neck Squamous cell carcinomas_OROPHARYNX_65 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 9058403
GSM1001267 Head and neck Squamous cell carcinomas_ORAL CAVITY_100 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 43362
GSM1001203 Head and neck Squamous cell carcinomas_OROPHARYNX_36 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7028976
GSM1001233 Head and neck Squamous cell carcinomas_OROPHARYNX_66 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7027567
GSM1001268 Head and neck Squamous cell carcinomas_OROPHARYNX_101 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42631
GSM1001234 Head and neck Squamous cell carcinomas_OROPHARYNX_67 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 6002450
GSM1001204 Head and neck Squamous cell carcinomas_OROPHARYNX_37 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8019409
GSM1001269 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_102 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 45089
GSM1001289 Head and neck Squamous cell carcinomas_OROPHARYNX_122 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 6005917
GSM1001235 Head and neck Squamous cell carcinomas_ORAL CAVITY_68 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 9005966
GSM1001193 Head and neck Squamous cell carcinomas_OROPHARYNX_26 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 8015304
GSM1001270 Head and neck Squamous cell carcinomas_OROPHARYNX_103 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:neg 50359
GSM1001290 Head and neck Squamous cell carcinomas_HYPOPHARYNX_123 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 6004099
GSM1001236 Head and neck Squamous cell carcinomas_HYPOPHARYNX_69 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 9056522
GSM1001205 Head and neck Squamous cell carcinomas_OROPHARYNX_38 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7045973
GSM1001271 Head and neck Squamous cell carcinomas_GLOTTIC LARYNX_104 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:GLOTTIC LARYNX; gender:M; hpv status:neg 50426
GSM1001237 Head and neck Squamous cell carcinomas_OROPHARYNX_70 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8017217
GSM1001291 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_124 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 9056985
GSM1001272 Head and neck Squamous cell carcinomas_OROPHARYNX_105 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 51383
GSM1001194 Head and neck Squamous cell carcinomas_ORAL CAVITY_27 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 8046447
GSM1001238 Head and neck Squamous cell carcinomas_OROPHARYNX_71 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8014985
GSM1001292 Head and neck Squamous cell carcinomas_HYPOPHARYNX_125 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 8019292
GSM1001273 Head and neck Squamous cell carcinomas_ORAL CAVITY_106 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 51466
GSM1001195 Head and neck Squamous cell carcinomas_OTHER_28 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OTHER; gender:M; hpv status:pos 9015891
GSM1001239 Head and neck Squamous cell carcinomas_OROPHARYNX_72 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 9012203
GSM1001293 Head and neck Squamous cell carcinomas_ORAL CAVITY_126 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 8016860
GSM1001274 Head and neck Squamous cell carcinomas_OROPHARYNX_107 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 51946
GSM1001240 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_73 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 69659
GSM1001206 Head and neck Squamous cell carcinomas_OROPHARYNX_39 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8017453
GSM1001275 Head and neck Squamous cell carcinomas_ORAL CAVITY_108 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:pos 56889
GSM1001294 Head and neck Squamous cell carcinomas_OROPHARYNX_127 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 8016618
GSM1001207 Head and neck Squamous cell carcinomas_OROPHARYNX_40 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7027845
GSM1001276 Head and neck Squamous cell carcinomas_OROPHARYNX_109 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 60333
GSM1001295 Head and neck Squamous cell carcinomas_OROPHARYNX_128 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 56898
GSM1001241 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_74 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 69693
GSM1001277 Head and neck Squamous cell carcinomas_OROPHARYNX_110 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 59965
GSM1001196 Head and neck Squamous cell carcinomas_ORAL CAVITY_29 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 8146630
GSM1001242 Head and neck Squamous cell carcinomas_ORAL CAVITY_75 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 69661
GSM1001296 Head and neck Squamous cell carcinomas_OROPHARYNX_129 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8046522
GSM1001278 Head and neck Squamous cell carcinomas_SUBGLOTTIC LARYNX_111 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUBGLOTTIC LARYNX; gender:M; hpv status:neg 64614
GSM1001208 Head and neck Squamous cell carcinomas_OROPHARYNX_41 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 8053396
GSM1001243 Head and neck Squamous cell carcinomas_OROPHARYNX_76 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 58612
GSM1001297 Head and neck Squamous cell carcinomas_OROPHARYNX_130 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 64823
GSM1001279 Head and neck Squamous cell carcinomas_OROPHARYNX_112 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 64646
GSM1001244 Head and neck Squamous cell carcinomas_OROPHARYNX_77 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42574
GSM1001197 Head and neck Squamous cell carcinomas_ORAL CAVITY_30 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 42583
GSM1001298 Head and neck Squamous cell carcinomas_OROPHARYNX_131 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 6002953
GSM1001280 Head and neck Squamous cell carcinomas_OROPHARYNX_113 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 64998
GSM1001245 Head and neck Squamous cell carcinomas_OROPHARYNX_78 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 42525
GSM1001209 Head and neck Squamous cell carcinomas_OROPHARYNX_42 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 6003531
GSM1001281 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_114 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 6002160
GSM1001299 Head and neck Squamous cell carcinomas_HYPOPHARYNX_132 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 69828
GSM1001246 Head and neck Squamous cell carcinomas_OROPHARYNX_79 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42708
GSM1001198 Head and neck Squamous cell carcinomas_ORAL CAVITY_31 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 9056840
GSM1001282 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_115 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 6003021
GSM1001300 Head and neck Squamous cell carcinomas_OROPHARYNX_133 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:neg 51778
GSM1001247 Head and neck Squamous cell carcinomas_OROPHARYNX_80 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42786
GSM1001210 Head and neck Squamous cell carcinomas_OROPHARYNX_43 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8018387
GSM1001301 Head and neck Squamous cell carcinomas_OROPHARYNX_134 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 7046357
GSM1001211 Head and neck Squamous cell carcinomas_OROPHARYNX_44 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7046319
GSM1001212 Head and neck Squamous cell carcinomas_OROPHARYNX_45 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7044634
GSM1001283 Head and neck Squamous cell carcinomas_ORAL CAVITY_116 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:F; hpv status:neg 6005884
GSM1001248 Head and neck Squamous cell carcinomas_OROPHARYNX_81 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42883
GSM1001284 Head and neck Squamous cell carcinomas_OROPHARYNX_117 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7027970
GSM1001285 Head and neck Squamous cell carcinomas_OROPHARYNX_118 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:pos 7044919
GSM1001249 Head and neck Squamous cell carcinomas_OROPHARYNX_82 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 42371
GSM1001286 Head and neck Squamous cell carcinomas_OROPHARYNX_119 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7044842
GSM1001287 Head and neck Squamous cell carcinomas_OROPHARYNX_120 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8015531
GSM1001288 Head and neck Squamous cell carcinomas_HYPOPHARYNX_121 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:F; hpv status:neg 6003940
GSM1001213 Head and neck Squamous cell carcinomas_OROPHARYNX_46 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:pos 8146623
GSM1001214 Head and neck Squamous cell carcinomas_OROPHARYNX_47 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8016909
GSM1001215 Head and neck Squamous cell carcinomas_OROPHARYNX_48 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7029070
GSM1001250 Head and neck Squamous cell carcinomas_OROPHARYNX_83 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42546
GSM1001216 Head and neck Squamous cell carcinomas_OROPHARYNX_49 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7046952
GSM1001251 Head and neck Squamous cell carcinomas_OROPHARYNX_84 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42548
GSM1001217 Head and neck Squamous cell carcinomas_OROPHARYNX_50 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 8017833
GSM1001252 Head and neck Squamous cell carcinomas_OROPHARYNX_85 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 43471
GSM1001218 Head and neck Squamous cell carcinomas_OROPHARYNX_51 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7028202
GSM1001253 Head and neck Squamous cell carcinomas_OROPHARYNX_86 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 43453
GSM1001219 Head and neck Squamous cell carcinomas_OROPHARYNX_52 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:pos 8016444
GSM1001254 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_87 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:pos 42599
GSM1001220 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_53 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 7029245
GSM1001255 Head and neck Squamous cell carcinomas_OROPHARYNX_88 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42720
GSM1001221 Head and neck Squamous cell carcinomas_ORAL CAVITY_54 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:ORAL CAVITY; gender:M; hpv status:neg 7046840
GSM1001256 Head and neck Squamous cell carcinomas_OROPHARYNX_89 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 42660
GSM1001222 Head and neck Squamous cell carcinomas_OROPHARYNX_55 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:F; hpv status:pos 7028531
GSM1001223 Head and neck Squamous cell carcinomas_OROPHARYNX_56 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 7028415
GSM1001257 Head and neck Squamous cell carcinomas_OROPHARYNX_90 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:pos 46335
GSM1001224 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_57 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 7044760
GSM1001258 Head and neck Squamous cell carcinomas_OROPHARYNX_91 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 42561
GSM1001225 Head and neck Squamous cell carcinomas_HYPOPHARYNX_58 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 9005875
GSM1001259 Head and neck Squamous cell carcinomas_OROPHARYNX_92 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:OROPHARYNX; gender:M; hpv status:neg 42364
GSM1001226 Head and neck Squamous cell carcinomas_HYPOPHARYNX_59 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:HYPOPHARYNX; gender:M; hpv status:neg 7028352
GSM1001260 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_93 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:F; hpv status:neg 42536
GSM1001261 Head and neck Squamous cell carcinomas_SUPRAGLOTTIC_94 tissue type:head and neck squamous cell carcinoma (HNSCC); anatomic site:SUPRAGLOTTIC; gender:M; hpv status:neg 42570
Platform GPL13497  : Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
Literature 25492084  
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xCell Plot
* p<0.05 ** p<0.01