HPV Target gene Detail Information

> LINC00111 Gene Search Result


Gene Information
Gene Name LINC00111
Gene ID 54090
Gene Full Name long intergenic non-protein coding RNA 111
Gene Alias C21orf21|NCRNA00111
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:1262
Target gene [LINC00111] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000354 chr21 260 15 4 279 View
5000591 chr21 32 94 0 126 View
5000612 chr21 29 91 0 120 View
5001626 chr21 23 3 1 27 View
5001627 chr21 24 3 0 27 View
5002060 chr21 13 3 1 17 View
5002411 chr21 11 1 0 12 View
5003217 chr21 2 3 0 5 View
5004685 chr21 0 0 0 0 View
5009818 chr21 0 0 0 0 View
5009819 chr21 31 95 0 126 View
5009820 chr21 170 131 39 340 View
5009821 chr21 2 8 0 10 View
5009822 chr21 261 15 4 280 View
5009823 chr21 5 4 0 9 View
5009824 chr21 10 8 1 19 View
5015718 chr21 179 5 0 184 View
5015719 chr21 18 10 0 28 View
5017429 chr21 12 9 2 23 View
5017430 chr21 187 5 0 192 View
5017431 chr21 0 2 0 2 View
5017432 chr21 15 8 0 23 View
5017433 chr21 599 30 6 635 View
5017434 chr21 200 54 3 257 View
5017435 chr21 22 16 0 38 View
5017436 chr21 42 18 4 64 View
5017437 chr21 26 3 67 96 View
5017438 chr21 2 3 0 5 View
5017439 chr21 2 10 1 13 View
5017440 chr21 415 201 50 666 View
5017441 chr21 474 217 61 752 View
5017442 chr21 86 16 1 103 View
5017443 chr21 47 214 0 261 View
5017444 chr21 48 215 0 263 View
5017445 chr21 51 227 0 278 View
5017446 chr21 0 0 0 0 View
5017447 chr21 0 0 0 0 View

Target gene [LINC00111] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC00111 expression across samples

Volcano Plot

Bar Plot