HPV Target gene Detail Information

> LINC00113 Gene Search Result


Gene Information
Gene Name LINC00113
Gene ID 54088
Gene Full Name long intergenic non-protein coding RNA 113
Gene Alias C21orf23|NCRNA00113|SLERCC
Transcripts ENSG00000225298
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:1264
lncRNASNP2 ID LINC00113
Target gene [LINC00113] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005115 chr21 6 0 0 6 View
5010213 chr21 0 0 4 4 View
5010524 chr21 59 0 8 67 View
5010855 chr21 0 4 0 4 View

Target gene [LINC00113] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00113 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00113 peak across samples

Peak Plot