HPV Target gene Detail Information

> LINC00273 Gene Search Result


Gene Information
Gene Name LINC00273
Gene ID 649159
Gene Full Name long intergenic non-protein coding RNA 273
Gene Alias NCRNA00273|TOP
Transcripts ENSG00000256642
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:38595
lncRNASNP2 ID LINC00273
Target gene [LINC00273] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006547 chr16 126 6 0 132 View
5009734 chr16 28 18 1 47 View
5010473 chr16 0 0 0 0 View

Target gene [LINC00273] related to Omics data
Data ID Experiment type Sample number Platform
GSE40774 Expression array 134 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00273 peak across samples

Peak Plot