HPV Target gene Detail Information

> LINC00358 Gene Search Result


Gene Information
Gene Name LINC00358
Gene ID 100874143
Gene Full Name long intergenic non-protein coding RNA 358
Gene Alias -
Transcripts ENSG00000229578
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42678
lncRNASNP2 ID LINC00358
Target gene [LINC00358] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005824 chr13 2 0 0 2 View
5010310 chr13 10 1 1 12 View
5010735 chr13 0 1 0 1 View
5010874 chr13 20 26 1 47 View
5012125 chr13 25 1 0 26 View

Target gene [LINC00358] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00358 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00358 peak across samples

Peak Plot