Gene Name	LINC00479
Gene ID	150135
Gene Full Name	long intergenic non-protein coding RNA 479
Gene Alias	C21orf129|PRED76
Transcripts	ENSG00000236384
Virus	HPV
Gene Type	ncRNA
HGNC ID	HGNC:19727
lncRNASNP2 ID	LINC00479

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5017429	chr21	12	9	2	23	View
5017430	chr21	187	5	0	192	View
5017431	chr21	0	2	0	2	View
5017432	chr21	15	8	0	23	View
5017433	chr21	599	30	6	635	View
5017434	chr21	200	54	3	257	View
5017435	chr21	22	16	0	38	View
5017436	chr21	42	18	4	64	View
5017437	chr21	26	3	67	96	View
5017438	chr21	2	3	0	5	View
5017439	chr21	2	10	1	13	View
5017440	chr21	415	201	50	666	View
5017441	chr21	474	217	61	752	View

Data ID	Experiment type	Sample number	Platform
C   GSE183048	Chip-seq	24	Illumina HiSeq 4000 (Homo sapiens)
GSE169622	Methylation profiling (Array)	9	Infinium MethylationEPIC
GSE181805	Expression array	25	[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215	RNA-seq	8	Illumina NovaSeq 6000 (Homo sapiens)
GSE140662	Expression array	8	[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542	Expression array	36	Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C   GSE143026	ATAC-seq;Chip-seq;RNA-seq	30	Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC	DNA methylation sequencing;RNA-seq	288	TCGA
GSE55550	Expression array	155	Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883	RNA-seq	20	Illumina NextSeq 500 (Homo sapiens)

• Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE183048 - LINC00479 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00479 peak across samples

Peak Plot