HPV Target gene Detail Information

> LINC00540 Gene Search Result


Gene Information
Gene Name LINC00540
Gene ID 100506622
Gene Full Name long intergenic non-protein coding RNA 540
Gene Alias -
Transcripts ENSG00000276476
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:43673
Target gene [LINC00540] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005074 chr13 16 0 0 16 View
5011212 chr13 5 0 0 5 View

Target gene [LINC00540] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00540 peak across samples

Peak Plot