HPV Target gene Detail Information

> LINC00662 Gene Search Result


Gene Information
Gene Name LINC00662
Gene ID 148189
Gene Full Name long intergenic non-protein coding RNA 662
Gene Alias -
Transcripts ENSG00000261824
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:27122
lncRNASNP2 ID LINC00662
Target gene [LINC00662] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005397 chr19 0 0 0 0 View
5006189 chr19 0 0 0 0 View
5006226 chr19 10 0 0 10 View
5009795 chr19 51 1 0 52 View

Target gene [LINC00662] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE143026 ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
E
  TCGA_CESC
DNA methylation sequencing;RNA-seq 288 TCGA
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC00662 expression across samples

Volcano Plot


Bar Plot