HPV Target gene Detail Information

> LINC01019 Gene Search Result


Gene Information
Gene Name LINC01019
Gene ID 285577
Gene Full Name long intergenic non-protein coding RNA 1019
Gene Alias LINC01017
Transcripts ENSG00000248118
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:27742
lncRNASNP2 ID LINC01019
Target gene [LINC01019] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010462 chr5 10 3 0 13 View
5017664 chr5 1 0 25 26 View
5017665 chr5 11 25 13 49 View
5017666 chr5 5 2 0 7 View
5017667 chr5 1 1 8 10 View
5017668 chr5 145 24 20 189 View
5017669 chr5 1 0 0 1 View
5017670 chr5 19 2 0 21 View
5017671 chr5 14 0 0 14 View
5017672 chr5 1 0 0 1 View

Target gene [LINC01019] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01019 peak across samples

Peak Plot