HPV Target gene Detail Information

> LINC01192 Gene Search Result


Gene Information
Gene Name LINC01192
Gene ID 647107
Gene Full Name long intergenic non-protein coding RNA 1192
Gene Alias CT64
Transcripts ENSG00000241369
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:37197
lncRNASNP2 ID LINC01192
Target gene [LINC01192] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005335 chr3 5 2 1 8 View
5017511 chr3 62 78 57 197 View
5017512 chr3 0 0 0 0 View
5017513 chr3 4 0 0 4 View
5017514 chr3 0 1 0 1 View
5017515 chr3 15 4 2 21 View
5017516 chr3 0 1 0 1 View
5017517 chr3 0 0 0 0 View
5017518 chr3 5 1 0 6 View
5017519 chr3 2 0 0 2 View
5017520 chr3 3 2 0 5 View
5017521 chr3 23 4 11 38 View
5017522 chr3 22 2 9 33 View

Target gene [LINC01192] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01192 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01192 peak across samples

Peak Plot