HPV Target gene Detail Information

> LINC01221 Gene Search Result


Gene Information
Gene Name LINC01221
Gene ID 104266961
Gene Full Name long intergenic non-protein coding RNA 1221
Gene Alias TCONS_00000366
Transcripts ENSG00000235492
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49671
Target gene [LINC01221] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011660 chr1 2 0 0 2 View
5011975 chr1 0 2 0 2 View

Target gene [LINC01221] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC01221 peak across samples

Peak Plot