HPV Target gene Detail Information

> LINC01419 Gene Search Result


Gene Information
Gene Name LINC01419
Gene ID 103352670
Gene Full Name long intergenic non-protein coding RNA 1419
Gene Alias LVCAT7|PRLH1|TCONS_00014497
Transcripts ENSG00000253898
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50712
lncRNASNP2 ID LINC01419
Target gene [LINC01419] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005648 chr8 62 4 0 66 View
5010461 chr8 1 4 7 12 View
5011539 chr8 0 0 0 0 View

Target gene [LINC01419] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01419 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01419 peak across samples

Peak Plot