HPV Target gene Detail Information

> LINC01541 Gene Search Result


Gene Information
Gene Name LINC01541
Gene ID 100505776
Gene Full Name long intergenic non-protein coding RNA 1541
Gene Alias UTAT39
Transcripts ENSG00000260676
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:51309
lncRNASNP2 ID LINC01541
Target gene [LINC01541] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5015321 chr18 0 0 0 0 View

Target gene [LINC01541] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC01541 expression across samples

Volcano Plot

Bar Plot