HPV Target gene Detail Information

> LINC01559 Gene Search Result


Gene Information
Gene Name LINC01559
Gene ID 283422
Gene Full Name long intergenic non-protein coding RNA 1559
Gene Alias C12orf36
Transcripts ENSG00000180861
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:26598
lncRNASNP2 ID LINC01559
Target gene [LINC01559] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010210 chr12 69 31 34 134 View

Target gene [LINC01559] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01559 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01559 peak across samples

Peak Plot