HTLV1 Target gene Detail Information

> LSAMP Gene Search Result


Gene Information
Gene Name LSAMP
Gene ID 4045
Gene Full Name limbic system associated membrane protein
Gene Alias IGLON3|LAMP
Transcripts ENSG00000185565
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q13449
HGNC ID HGNC:6705
OMIM ID 603241
Summary This gene encodes a member of the immunoglobulin LAMP, OBCAM and neurotrimin (IgLON) family of proteins. The encoded preproprotein is proteolytically processed to generate a neuronal surface glycoprotein. This protein may act as a selective homophilic adhesion molecule during axon guidance and neuronal growth in the developing limbic system. The encoded protein may also function as a tumor suppressor and may play a role in neuropsychiatric disorders. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed. [provided by RefSeq, Jan 2016]
Target gene [LSAMP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6023196 chr3 4 0 0 4 View
6025134 chr3 3 0 0 3 View
6026954 chr3 2 0 0 2 View
6026955 chr3 2 0 0 2 View
6028783 chr3 0 1 0 1 View
6029956 chr3 1 0 0 1 View
6033288 chr3 0 0 0 0 View

Target gene [LSAMP] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LSAMP peak across samples

Peak Plot