HTLV1 Target gene Detail Information

> MYCBP2 Gene Search Result


Gene Information
Gene Name MYCBP2
Gene ID 23077
Gene Full Name MYC binding protein 2
Gene Alias Myc-bp2|PAM|PHR1|Phr
Transcripts ENSG00000005810
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Vesicles, Cytosol;
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins
Uniport_ID O75592
HGNC ID HGNC:23386
OMIM ID 610392
Summary This gene encodes an E3 ubiquitin-protein ligase and member of the PHR (Phr1/MYCBP2, highwire and RPM-1) family of proteins. The encoded protein plays a role in axon guidance and synapse formation in the developing nervous system. In mammalian cells, this protein regulates the cAMP and mTOR signaling pathways, and may additionally regulate autophagy. Reduced expression of this gene has been observed in acute lymphoblastic leukemia patients and a mutation in this gene has been identified in patients with a rare inherited vision defect. [provided by RefSeq, Mar 2017]
Target gene [MYCBP2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6022434 chr13 4 1 0 5 View
6023354 chr13 2 2 0 4 View
6029421 chr13 0 1 0 1 View
6030561 chr13 0 0 0 0 View
6031613 chr13 0 0 0 0 View

Target gene [MYCBP2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
E
  GSE19080
Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE19080 - MYCBP2 expression across samples

Volcano Plot


Bar Plot