HBV Target gene Detail Information

> NCL Gene Search Result


Gene Information
Gene Name NCL
Gene ID 4691
Gene Full Name nucleolin
Gene Alias C23|Nsr1
Transcripts ENSG00000115053
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Nucleoli, Nucleoli rim;Mitotic chromosome;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P19338
HGNC ID HGNC:7667
OMIM ID 164035
Summary Nucleolin (NCL), a eukaryotic nucleolar phosphoprotein, is involved in the synthesis and maturation of ribosomes. It is located mainly in dense fibrillar regions of the nucleolus. Human NCL gene consists of 14 exons with 13 introns and spans approximately 11kb. The intron 11 of the NCL gene encodes a small nucleolar RNA, termed U20. [provided by RefSeq, Jul 2008]
Target gene [NCL] related to virus gene/protein/region

Mutation Table: if previous studies reported that target gene was related to virus gene/region/protein, the information in this literature was listed in this section


ID PMID Mutation Gene/Protein/Region Encoding Gene/Protein Disease Description Detail
1 15564475 I97E
C
C
Hepatitis B Virus Infection
T
View
2 15564475 I97W
C
C
Hepatitis B Virus Infection
T
View
3 15564475 I97D
C
C
Hepatitis B Virus Infection
T
View
4 15564475 I97G
C
C
Hepatitis B Virus Infection
T
View
5 15564475 I97P
C
C
Hepatitis B Virus Infection
T
View
6 15564475 I97L
C
C
Hepatitis B Virus Infection
T
View
7 15564475 I97A
C
C
Hepatitis B Virus Infection
T
View
8 15564475 I97C
C
C
Hepatitis B Virus Infection
T
View
9 15564475 I97F
C
C
Hepatitis B Virus Infection
T
View
10 15564475 I97V
C
C
Hepatitis B Virus Infection
T
View
11 15564475 I97Y
C
C
Hepatitis B Virus Infection
T
View

Target gene [NCL] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1020958 chr2 16 4 0 20 View

Target gene [NCL] related to Omics data
Data ID Experiment type Sample number Platform
GSE252863 scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465
Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402
Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
S
  GSE247322
scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130
Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257
ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE247322 - Gene expression in cell subsets