HTLV1 Target gene Detail Information

> NEO1 Gene Search Result


Gene Information
Gene Name NEO1
Gene ID 4756
Gene Full Name neogenin 1
Gene Alias IGDCC2|NGN|NTN1R2
Transcripts ENSG00000067141
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Plasma membrane;Golgi apparatus;
Membrane Info Cancer-related genes, Plasma proteins, Predicted membrane proteins
Uniport_ID Q92859
HGNC ID HGNC:7754
OMIM ID 601907
Summary This gene encodes a cell surface protein that is a member of the immunoglobulin superfamily. The encoded protein consists of four N-terminal immunoglobulin-like domains, six fibronectin type III domains, a transmembrane domain and a C-terminal internal domain that shares homology with the tumor suppressor candidate gene DCC. This protein may be involved in cell growth and differentiation and in cell-cell adhesion. Defects in this gene are associated with cell proliferation in certain cancers. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010]
Target gene [NEO1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008206 chr15 12 28 7 47 View
6011711 chr15 3 17 5 25 View
6018387 chr15 4 2 3 9 View
6018778 chr15 2 7 0 9 View

Target gene [NEO1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - NEO1 peak across samples

Peak Plot