HPV Target gene Detail Information

> PCAT1 Gene Search Result


Gene Information
Gene Name PCAT1
Gene ID 100750225
Gene Full Name prostate cancer associated transcript 1
Gene Alias PCA1|PCAT-1|PiHL
Transcripts ENSG00000253438
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:43022
OMIM ID 616043
lncRNASNP2 ID PCAT1
Summary This gene produces a long non-coding RNA that promotes cell proliferation and is upregulated in prostate, colorectal, and other cancers. This RNA negatively regulates the BRCA2 tumor suppressor protein and positively regulates Myc oncoprotein. It contains binding sites for microRNAs, and may act as a sponge for microRNAs that regulate cell growth pathways. [provided by RefSeq, Dec 2017]
Target gene [PCAT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004717 chr8 2674 3617 1541 7832 View
5014456 chr8 70 2 0 72 View
5014457 chr8 144 497 70 711 View
5014458 chr8 151 147 0 298 View
5014459 chr8 89 121 3 213 View
5014460 chr8 88 122 3 213 View
5014461 chr8 28 2 0 30 View
5016368 chr8 211 74 10 295 View
5016369 chr8 259 46 3 308 View
5016370 chr8 84 14 7 105 View
5016371 chr8 470 68 134 672 View
5016372 chr8 458 67 128 653 View
5016373 chr8 9 21 22 52 View
5016374 chr8 6 1 3 10 View
5016375 chr8 43 27 11 81 View
5016376 chr8 1 1 0 2 View
5016377 chr8 1 0 1 2 View
5016378 chr8 178 56 1 235 View
5017790 chr8 14 17 0 31 View
5017791 chr8 14 17 0 31 View
5017792 chr8 0 1 9 10 View
5017793 chr8 9 18 1 28 View
5017794 chr8 64 29 0 93 View
5017795 chr8 104 31 0 135 View
5017796 chr8 23 23 2 48 View
5017797 chr8 21 17 2 40 View

Target gene [PCAT1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PCAT1 peak across samples

Peak Plot

> Dataset: GSE143026 - PCAT1 peak across samples

Peak Plot