HTLV1 Target gene Detail Information

> PCDH9 Gene Search Result


Gene Information
Gene Name PCDH9
Gene ID 5101
Gene Full Name protocadherin 9
Gene Alias -
Transcripts ENSG00000184226
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Centrosome;
Membrane Info Plasma proteins, Predicted membrane proteins
Uniport_ID Q9HC56
HGNC ID HGNC:8661
OMIM ID 603581
Summary This gene encodes a member of the protocadherin family, and cadherin superfamily, of transmembrane proteins containing cadherin domains. These proteins mediate cell adhesion in neural tissues in the presence of calcium. The encoded protein may be involved in signaling at neuronal synaptic junctions. Sharing a characteristic with other protocadherin genes, this gene has a notably large exon that encodes multiple cadherin domains and a transmembrane region. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Nov 2012]
Target gene [PCDH9] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6001245 chr13 295 69 154 518 View
6005797 chr13 1 27 52 80 View
6009686 chr13 11 16 8 35 View
6014338 chr13 4 9 4 17 View
6015579 chr13 11 3 0 14 View
6019182 chr13 1 7 0 8 View
6019461 chr13 4 4 0 8 View
6022433 chr13 2 3 0 5 View
6025216 chr13 2 1 0 3 View
6025907 chr13 2 0 0 2 View
6025914 chr13 2 0 0 2 View
6025947 chr13 2 0 0 2 View
6026271 chr13 1 1 0 2 View
6027038 chr13 2 0 0 2 View
6028263 chr13 0 1 0 1 View
6029807 chr13 0 1 0 1 View
6029808 chr13 0 1 0 1 View
6030104 chr13 1 0 0 1 View
6030935 chr13 0 0 0 0 View
6032339 chr13 0 0 0 0 View

Target gene [PCDH9] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PCDH9 peak across samples

Peak Plot