HTLV1 Target gene Detail Information

> RERE Gene Search Result


Gene Information
Gene Name RERE
Gene ID 473
Gene Full Name arginine-glutamic acid dipeptide repeats
Gene Alias ARG|ARP|ATN1L|DNB1|NEDBEH
Transcripts ENSG00000142599
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear bodies;Nucleoplasm;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID Q9P2R6
HGNC ID HGNC:9965
OMIM ID 605226
Summary This gene encodes a member of the atrophin family of arginine-glutamic acid (RE) dipeptide repeat-containing proteins. The encoded protein co-localizes with a transcription factor in the nucleus, and its overexpression triggers apoptosis. A similar protein in mouse associates with histone deacetylase and is thought to function as a transcriptional co-repressor during embryonic development. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Target gene [RERE] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6007261 chr1 41 16 1 58 View
6009285 chr1 2 34 2 38 View
6011300 chr1 25 1 1 27 View
6013839 chr1 17 1 0 18 View
6018239 chr1 9 0 0 9 View
6021583 chr1 3 3 0 6 View
6025981 chr1 2 0 0 2 View
6030018 chr21 1 0 0 1 View
6032972 chr1 0 0 0 0 View

Target gene [RERE] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
E
  GSE19080 		Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE19080 - RERE expression across samples

Volcano Plot

Bar Plot