HPV Target gene Detail Information

> RNU5D-1 Gene Search Result


Gene Information
Gene Name RNU5D-1
Gene ID 26830
Gene Full Name RNA, U5D small nuclear 1
Gene Alias RNU5D|U5DL|U5DS
Transcripts ENSG00000200169
Virus HPV
Gene Type snRNA
HGNC ID HGNC:10214
OMIM ID 620361
Summary Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [RNU5D-1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010403 chr5 9 20 10 39 View

Target gene [RNU5D-1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - RNU5D-1 peak across samples

Peak Plot

> Dataset: GSE143026 - RNU5D-1 peak across samples

Peak Plot