HTLV1 Target gene Detail Information

> RUFY3 Gene Search Result


Gene Information
Gene Name RUFY3
Gene ID 22902
Gene Full Name RUN and FYVE domain containing 3
Gene Alias RIPX|SINGAR1|ZFYVE30
Transcripts ENSG00000018189
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q7L099
HGNC ID HGNC:30285
OMIM ID 611194
Summary This gene encodes a RPIP8, UNC-14, and NESCA domain-containing protein that is required for maintenance of neuronal polarity. In addition, it has been implicated in mediation of gastric cancer cell migration and invasion via interaction with P21-activated kinase-1, which promotes its expression. The encoded protein localizes to F-actin-enriched invadopodia to induce formation of protrusions, thereby facilitating cell migration. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]
Target gene [RUFY3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004985 chr4 98 0 1 99 View
6004986 chr4 98 0 1 99 View
6009182 chr4 31 6 2 39 View
6018898 chr4 7 1 0 8 View
6019787 chr4 4 3 0 7 View

Target gene [RUFY3] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - RUFY3 peak across samples

Peak Plot