HTLV1 Target gene Detail Information

> SCARB1 Gene Search Result


Gene Information
Gene Name SCARB1
Gene ID 949
Gene Full Name scavenger receptor class B member 1
Gene Alias CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1
Transcripts ENSG00000073060
Virus HTLV1
Gene Type protein-coding
HPA Location Info Vesicles;Lysosomes, Rods & Rings;
Membrane Info Metabolic proteins, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q8WTV0
HGNC ID HGNC:1664
OMIM ID 601040
Summary The protein encoded by this gene is a plasma membrane receptor for high density lipoprotein cholesterol (HDL). The encoded protein mediates cholesterol transfer to and from HDL. In addition, this protein is a receptor for hepatitis C virus glycoprotein E2 and facilitates cell entry by the virus, SARS-CoV2. [provided by RefSeq, Oct 2021]
Target gene [SCARB1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005619 chr12 81 2 0 83 View
6006908 chr12 15 3 44 62 View

Target gene [SCARB1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE19080 Expression array 38 Homo sapiens 3K Immunoarray2 HTLV-1 JH
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SCARB1 peak across samples

Peak Plot