HBV Target gene Detail Information

> SLBP Gene Search Result


Gene Information
Gene Name SLBP
Gene ID 7884
Gene Full Name stem-loop histone mRNA binding protein
Gene Alias HBP
Transcripts ENSG00000163950
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Nucleoli;Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q14493
HGNC ID HGNC:10904
OMIM ID 602422
Summary This gene encodes a protein that binds to the stem-loop structure in replication-dependent histone mRNAs. Histone mRNAs do not contain introns or polyadenylation signals, and are processed by endonucleolytic cleavage. The stem-loop structure is essential for efficient processing but this structure also controls the transport, translation and stability of histone mRNAs. Expression of the protein is regulated during the cell cycle, increasing more than 10-fold during the latter part of G1. [provided by RefSeq, Jul 2008]
Target gene [SLBP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1011601 chr4 5 3 0 8 View
1011605 chr4 5 3 0 8 View
1011656 chr4 5 3 0 8 View
1011667 chr4 5 3 0 8 View
1011995 chr4 5 3 0 8 View
1012072 chr4 5 2 0 7 View
1012073 chr4 5 2 0 7 View
1012075 chr4 5 2 0 7 View
1012089 chr4 5 2 0 7 View
1012090 chr4 5 2 0 7 View
1012127 chr4 5 2 0 7 View
1012130 chr4 5 2 0 7 View
1012364 chr4 5 2 0 7 View
1022081 chr4 5 2 0 7 View
1022082 chr4 5 2 0 7 View
1022910 chr4 5 3 0 8 View
1023137 chr4 5 2 0 7 View
1023138 chr4 5 3 0 8 View

Target gene [SLBP] related to Omics data
Data ID Experiment type Sample number Platform
S
  GSE252863 		scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
S
  GSE247322 		scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
GSE131257 ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
E
  GSE94660 		RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - SLBP expression across samples

Volcano Plot

Bar Plot

> Dataset: GSE94660 - SLBP expression across samples

Volcano Plot

Bar Plot